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Welcome
Introduction
Sequence Read Quality Lecture
Morning break
Sequence assembly
Sequence Assembly Lecture
Lunch break
Sequence Quality
Inspecting sequence graphs
Afternoon break
Introduction day 2
Annotation
Morning break
Bacterial GWAS Lecture
Pangenome analysis
Lunch break
Phylogenetic trees from the core genome
Bacterial GWAS
Wrapup
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Microbial Genomics course 2022
: Instructor Notes